ProteinPilot software
ProteinPilot software is a powerful, robust and intuitive software tool for protein identification and quantification for discovery research and protein characterization. A paradigm shift in protein identification and relative protein expression analysis for protein research, ProteinPilot software streamlines protein identification and quantitation, enabling you to identify hundreds of peptide modifications and non-tryptic cl…
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Allowing to get a different view on our data
A different view on your dataset
ProteinPilot Software allows you to analyze your proteomics data with two different algorithms: MASCOT and Paragon. The Paragon algorithm is actually the basis of the ProteinPilot software and allows a different view on the dataset. Importantly, searches with a significant number of modifications can be performed without the issues e.g. obtained when using MASCOT. Besides SCIEX data (MALDI, QTOF, QTRAP) we also loaded data from other vendors (e.g. Thermo). Good visualization of the data within the software. Easy data extraction / export for further processing.
Review Date: 30 Jan 2017 | SCIEX
A complete protein identification and quantification pipeline.
Comparing protein quantity in iTRAQ labeled samples
I find ProteinPilot to be a gem among protein search engines. It was initially made by ABSciex for iTRAQ applications on QStars and Triple TOF instruments, which is what we used it for. It has always been very fast and easy to use. It is light weight so you can run it on just a desktop or even a laptop, and it combines peptide identification, protein inference, quantification and visualization in one package. It is also one of the non-SEQUEST style search engines on the market (I believe it uses some variations of sequence tags for identification) that makes it good for combinatorial or comparison use in large projects.
Review Date: 25 Jan 2016 | SCIEX
Metabolism chemistry
This software is extremely useful when doing protein ID specially when it comes to Plant metabolism as it helps identify modification done by enzymatic reactions and also aid the identity of the enzymes themselves. It is easy to use and reliable
Review Date: 22 Jun 2015 | SCIEX
This product is excellent for peptide sequencing and protein bio-marker determination. It provides the ability to build your library and also helps determine matches to other as PDB. I highly recommend this product if you work with proteins.
Review Date: 12 Feb 2015 | SCIEX
ProteinPilot software is a powerful, robust and intuitive software tool for protein identification and quantification for discovery research and protein characterization. A paradigm shift in protein identification and relative protein expression analysis for protein research, ProteinPilot software streamlines protein identification and quantitation, enabling you to identify hundreds of peptide modifications and non-tryptic cleavages simultaneously. Powered by sophisticated algorithms, you can now easily and confidently distinguish protein isoforms, protein subsets, and suppress false positives, as well as visualize peptide-protein associations and relationships.
