ProteinPilot™ Software by SCIEX

Manufacturer SCIEX  |  Available Worldwide
4.1
/
5.0
  |  4 reviews
Identify and Quantify Proteins Faster, With More Confidence


ProteinPilot™ Software by SCIEX product image
ProteinPilot™ Software

The supplier does not provide quotations for this particular product through SelectScience. You can search for similar products in our product directory.




Average Rating: 4.1
4 Scientists have reviewed this product

4 out of 5
Ease of use
4 out of 5
After sales service
4 out of 5
Value for money


  • Status:

    Expert Reviewer
  • Member since: 2016

  • Organization: Novartis Pharma AG



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Allowing to get a different view on our data
Rating: 5.0

  • Application Area: A different view on your dataset

"ProteinPilot Software allows you to analyze your proteomics data with two different algorithms: MASCOT and Paragon. The Paragon algorithm is actually the basis of the ProteinPilot software and allows a different view on the dataset. Importantly, searches with a significant number of modifications can be performed without the issues e.g. obtained when using MASCOT. Besides SCIEX data (MALDI, QTOF, QTRAP) we also loaded data from other vendors (e.g. Thermo). Good visualization of the data within the software. Easy data extraction / export for further processing."

Review date: 30 Jan 2017 | ProteinPilot™ Software
  • Status:

    Reviewer

  • Member since: 2015

  • Organization: UCLA



  • Ease of use
    3 out of 5
    After sales service
    4 out of 5
    Value for money
    4 out of 5
A complete protein identification and quantification pipeline.
Rating: 3.7

  • Application Area:Comparing protein quantity in iTRAQ labeled samples

"I find ProteinPilot to be a gem among protein search engines. It was initially made by ABSciex for iTRAQ applications on QStars and Triple TOF instruments, which is what we used it for. It has always been very fast and easy to use. It is light weight so you can run it on just a desktop or even a laptop, and it combines peptide identification, protein inference, quantification and visualization in one package. It is also one of the non-SEQUEST style search engines on the market (I believe it uses some variations of sequence tags for identification) that makes it good for combinatorial or comparison use in large projects."

Review date: 25 Jan 2016 | ProteinPilot™ Software
  • Status:

    Expert Reviewer

  • Member since: 2013

  • Organization: JRFAmerica



  • Ease of use
    5 out of 5
    After sales service
    3 out of 5
    Value for money
    4 out of 5
Rating: 4.0

  • Application Area:Metabolism chemistry

"This software is extremely useful when doing protein ID specially when it comes to Plant metabolism as it helps identify modification done by enzymatic reactions and also aid the identity of the enzymes themselves. It is easy to use and reliable"

Review date: 22 Jun 2015 | ProteinPilot™ Software
  • Status:

    Expert Reviewer

  • Member since: 2013

  • Organization: JRFAmerica



  • Ease of use
    4 out of 5
    After sales service
    3 out of 5
    Value for money
    4 out of 5
Rating: 3.7
"This product is excellent for peptide sequencing and protein bio-marker determination. It provides the ability to build your library and also helps determine matches to other as PDB. I highly recommend this product if you work with proteins."

Review date: 12 Feb 2015 | ProteinPilot™ Software

ProteinPilot Software is a powerful, robust and intuitive software tool for protein identification and quantification for discovery research and protein characterization.

Experience it free, today!  

A paradigm shift in protein identification and relative protein expression analysis for protein research, ProteinPilot Software streamlines protein identification and quantitation, enabling you to identify hundreds of peptide modifications and non-tryptic cleavages simultaneously. Powered by sophisticated algorithms, you can now easily and confidently distinguish protein isoforms, protein subsets, and suppress false positives, as well as visualize peptide-protein associations and relationships.

Features of ProteinPilot Software:

  • Paragon™ Algorithm automates extensive peptide identification for deep sample interrogation so you can easily search for hundreds of biological and other modifications, genetic variants and unexpected cleavages simultaneously and avoid an explosion of false positives.
  • Industry-leading Pro Group™ Algorithm provides confident protein assignment, determining with clarity-detected proteins, reporting ambiguity among accession numbers to improve meaningfulness in the comparison of results and suppress false positives.
  • Parameter Translation Layer Function makes search setup easier enabling you to enter sample information in your own terms, and the software intelligently determines the search parameters.
  • Integrated false discovery rate (FDR) analysis uses decoy database searching to provide high quality, defensible protein identification results for accurate assessment of the reliability of results.
  • Quantitative workflows optimized through integrated support for iTRAQ® Reagents (4-plex and 8-plex) and numerous MS1 quantitation strategies (e.g. ICAT®, SILAC, mTRAQ® Reagents) for protein expression analysis and biomarker discovery.
  • ProteinPilot Descriptive Statistics Template (PDST) allows you to automatically generate a wealth of important information from data-intensive proteomics experiments, which would normally require many weeks of manual data crunching.

 

Key benefits of the ProteinPilot Software:

  • Powerful - Detect more peptides and post-translational modification than ever before by leveraging  on the power of smarter algorithms
  • Accurate -  Overcome ambiguity by confidently determining the minimal set of justifiable detected proteins
  • Efficient - Gain a much deeper understanding of LC/MS identification and quantitation results, in minutes rather than weeks.
  • Intuitive -  embedded tools that intelligently get you the results you need, no matter what your informatics expertise
  • Flexible - Processes data from any vendor’s mass spectrometer using generic peak lists.

 

Application areas:

Life Science Research

Instrument Compatibility:

ProteinPilot Software is compatible with all proteomics MS/MS systems via the.*mgf format