Accelerating cell line development with selective single-cell cloning

18 Sept 2026

Cell line development workflows must balance two competing priorities: shortening the time needed to isolate production clones and identifying cells capable of delivering high recombinant protein productivity.

This whitepaper investigates a combined cloning strategy using low-viability Chinese hamster ovary (CHO) cell pools, cold-capture staining and the Beacon® Optofluidic System. Researchers evaluated the approach across three antibody formats to determine whether early cloning and fluorescence-based enrichment could accelerate clone selection while improving titer and clone-specific productivity.

Discover how selective single-cell cloning can focus screening capacity on promising producers, reduce cell line development timelines, and support the identification of highly productive CHO clones. The study reports that using low-viability pools shortened the workflow by two weeks, while combining early sorting with cold-capture enrichment produced clones with higher productivity than the conventional workflow tested.

Resource details:

Resource type: Whitepaper
Page count:
10 pages
Read time:
15 mins

Beacon® Optofluidic System

Bruker Cellular Analysis

Understand the Life of Single Cells. The Beacon system unites optics, fluidics, and imaging to deliver high‑parameter, real‑time functional analysis of up to 60,000 live single cells. With automated scalability and downstream recovery, it accelerates therapeutic antibody discovery, vaccine development, immune profiling, cell therapy, and cell line development.

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Biopharmaceutical AdvancesBiopharmaceutical advances follow the development of pharmaceuticals derived from biotechnology, also known as biotechnology medicines. Biopharmaceuticals may be produced from cell lines, plants, or microbial cells. Important considerations of biopharmaceutical use include application, cost, production process and purification.Cell / Tissue CultureCell culture or tissue culture is used to study the biology of cells or tissues and to isolate cellular products in an environment which can be manipulated and well defined. Accurately control your culture environment with bioreactors or culture incubators, bind your cells to a surface or together with an extracellular matrix. Distinguish cell types with differential media or proliferate cells with certain characteristics using selective media. Enrich your media with supplements such as growth factors, sera and vitamins. Find the best cell and tissue culture products, kits and equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Flow Cytometry / Cell CountingFlow cytometers are used to count, sort and examine multiple characteristics of cells. Other cell analysis equipment includes image cytometers, cell counters, fluorescence-activated cell sorters (FACS), magnetic-activated cell sorters (MACS), and a range of flow cytometry assay kits. Flow cytometers can reveal information on cell viability, cell proliferation, apoptosis and cell cycle progression, as well as identify cell populations and intracellular or cell-surface molecules. Additionally, some flow cytometers, known as FACS, have an additional sorting function after analysis. Cell counters and image cytometers count live and dead cell populations and can also conduct cell proliferation assays. Find the best flow cytometers, cell counters and cell sorters in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Cell Line DevelopmentProtein ProductionTherapeutic AntibodiesTherapeutic antibodies are antibodies engineered for use in treating diseases. They can be designed to target specific antigens, blocking harmful interactions or modulating immune responses. Therapeutic antibodies are critical in treating conditions like cancer, autoimmune disorders, and infectious diseases. Explore the best therapeutic antibody products in our peer-reviewed product directory; compare options, check reviews, and get pricing directly from manufacturers.