Personal Genome Diagnostics Collaborates on Study Uncovering New Actionable Mutations and Prognostic Predictors in Pancreatic Cancer.

Study in Nature Communications identifies new predictors of patient outcome and suggests targeted therapy approaches may benefit more patients than previously thought.

8 Jul 2015
Chelsie Phillips
Temporary Editorial Assistant

Industry news

Personal Genome Diagnostics, Inc. (PGDx), a provider of advanced cancer genome analysis and testing services, have announced the publication of a study in Nature Communications, that has uncovered important new genetic information relevant to the prognosis and treatment of pancreatic cancer, the deadliest of all solid tumor cancers. PGDx conducted the whole exome sequencing and provided analyses of targeted cancer panels for the study in collaboration with researchers from Johns Hopkins University and other leading U.S. and international cancer centers. Lead author Mark Sausen, PhD, is Vice President of Research & Development at PGDx.

The study integrated large-scale genomic and clinical analyses of pancreatic cancer patients. Its main findings include the discovery that many more patients with pancreatic cancer have clinically actionable genetic mutations in their tumors than was previously thought – about one-third of all patients in the study. These included a number of mutations that had not previously been associated with pancreatic cancer. The presence of these mutations offers the potential for treatment with mutation-specific targeted cancer therapies that may prove more effective than current therapies. The study also showed that certain tumor mutations were associated with different patient outcomes, providing oncologists and patients with useful information to help guide treatment decisions. For example, the study identified a family of mutations in chromatin regulating genes as markers of improved prognosis, including a new biomarker that predicts how well stage 2 pancreatic cancer patients will do after surgical resection of their tumor.

Another arm of the study evaluated the utility of liquid biopsies to detect circulating cell-free DNA in the blood of pancreatic cancer patients. These analyses showed that this non-invasive methodology could both detect circulating tumor DNA in early-stage patients at the time of diagnosis, and accurately detect the presence of residual or recurrent disease just three months after treatment, which is more than six months earlier than standard imaging--the current standard of care. Earlier detection may allow physicians to implement more effective treatment options for both early-stage and relapsing patients.

Dr. Sausen commented, “PGDx was founded on the principle that integrating genomic and clinical information was essential to realizing the potential of precision medicine. This collaborative study highlights how combining large-scale genomic analyses with clinical data can yield valuable new knowledge for pancreatic cancer. Despite some limitations, the data uncovered in this study has immediate implications for the treatment of pancreatic cancer, as well as indicating the types of studies needed to validate and expand our understanding of how these mutations impact the disease. PGDx is a pioneer in the analysis of cell-free DNA shed by tumors into the circulation, so we were also pleased that the study confirmed the utility of this approach in pancreatic cancer patients. We look forward to the opportunity to incorporate these findings into our genomic products and services for cancer researchers, patients, and physicians.”

Links

Tags

Cell / Tissue CultureCell culture or tissue culture is used to study the biology of cells or tissues and to isolate cellular products in an environment which can be manipulated and well defined. Accurately control your culture environment with bioreactors or culture incubators, bind your cells to a surface or together with an extracellular matrix. Distinguish cell types with differential media or proliferate cells with certain characteristics using selective media. Enrich your media with supplements such as growth factors, sera and vitamins. Find the best cell and tissue culture products, kits and equipment in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.Cellular PathologyCellular Pathology deals with the microscopic analysis of tissue samples and cells. Sample preparation and processing includes fixation, staining, sectioning and slide mounting, using equipment such microtomes and cryostats. In choosing immunohistochemistry and immunocytochemistry kits, consider chromogens, staining method, antibodies, microscopes and imaging.Genome SequencingGenome sequencing involves determining the complete DNA sequence of an organism's genome. It provides crucial information about genetic variations, mutations, and diseases. Advances in sequencing technologies, such as next-generation sequencing (NGS), have accelerated research in genomics, diagnostics, and personalized medicine. Explore genome sequencing tools in our peer-reviewed product directory; compare products, check reviews, and get pricing directly from manufacturers.Cancer ResearchAlthough cancer is often referred to as a single condition, it actually consists of more than 100 different diseases. Microscopy, mass spectrometry, high throughput sequencing and flow cytometry are some of the most common techniques employed in cancer research labs.Cancer DiagnosticsThere are a wide variety of diagnostic tests for cancer available, and this range continues to expand as our knowledge of cancer improves. Current diagnostic methods include biopsy, imaging and blood tests for known biomarkers. New methods in research development include liquid biopsies and cancer breathalyzers.Pancreatic Cancer
Personal Genome Diagnostics Collaborates on Study Uncovering New Actionable Mutations and Prognostic Predictors in Pancreatic Cancer.