Sapio Sciences makes AI-native drug discovery seamless with NVIDIA BioNeMo

Integration of the NVIDIA BioNeMo platform enhances AI capabilities across the drug discovery lifecycle

21 Mar 2025

Product news

Sapio Sciences has integrated the NVIDIA BioNeMo platform into the Sapio Lab Informatics Platform, embedding AI-driven computational drug discovery directly within the Sapio ELN (Electronic Lab Notebook). This collaboration enables researchers in pharmaceutical and biotechnology organizations to access advanced generative AI models for molecular modeling and protein structure prediction in one unified environment, helping streamline drug discovery workflows, improve decision-making, and accelerate the transition from discovery to development.

AI-powered drug discovery with NVIDIA BioNeMo

By incorporating the NVIDIA BioNeMo platform, the Sapio Lab Informatics Platform gives scientists access to science-specific AI frameworks, pre-trained models, and generative AI tools that support faster and more accurate identification of potential drug candidates. NVIDIA BioNeMo provides a framework for training and deploying large biomolecular language models at supercomputing scale, enabling researchers to enhance target selection and optimize molecules using AI-driven insights.

Embedded in silico tools within Sapio ELN

The integration of BioNeMo into the Sapio Platform delivers embedded in silico capabilities directly inside Sapio ELN. Researchers can generate novel candidate molecules early in the research process and test their docking with a target protein without leaving their primary lab informatics environment. With AI-driven molecular simulations available in a single, unified workflow, teams can streamline processes, enhance innovation, and reduce the time required to move from discovery to development.

Access to BioNeMo NIM microservices and generative AI models

Within Sapio ELN, scientists can access BioNeMo NIM microservices to rapidly identify and optimize drug candidates using AI-driven molecular modeling. Available models include AlphaFold2 NIM for predicting accurate 3D protein structures, MoIMIM NIM for the design and optimization of small molecules, and DiffDock NIM, an AI-powered docking model developed by MIT. These models provide researchers with powerful AI tools without extensive setup, supporting faster, more efficient research workflows.

Advancing pharmaceutical research with AI

Anthony Costa, Director, Digital Biology at NVIDIA, said, “Integrating BioNeMo into Sapio’s AI-driven research platform gives scientists access to advanced generative AI models for drug discovery. With AlphaFold2, MoIMIM, and DiffDock NIMs, researchers can predict, optimize, and validate drug candidates with greater speed and accuracy. This work underscores AI’s growing role in transforming pharmaceutical research and accelerating the path to breakthrough treatments.”

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Sapio LIMS

Sapio Sciences

Sapio LIMS is a configurable, open, and easy-to-use LIMS platform. It supports the entire laboratory workflow, from request to sample preparation to analysis and reporting. Sapio LIMS has powerful no-code configuration, making it easy to set up to support your laboratory’s unique requirements. And with a range of out-of-the-box applications, such as NGS and in vivo, you can quickly start making the most of Sapio LIMS.

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Frequently asked questions

How does the integration of NVIDIA BioNeMo with the Sapio Lab Informatics Platform enhance AI-powered drug discovery?

The integration of NVIDIA BioNeMo into the Sapio Lab Informatics Platform embeds AI-driven computational drug discovery directly within the Sapio ELN (Electronic Lab Notebook). This gives researchers in pharmaceutical and biotechnology organizations access to science-specific AI frameworks, pre-trained models, and generative AI tools for molecular modeling and protein structure prediction in a single, unified environment. By supporting faster and more accurate identification of potential drug candidates, the collaboration helps streamline drug discovery workflows, improve decision-making, and accelerate the transition from discovery to development.

What in silico capabilities are embedded in Sapio ELN through NVIDIA BioNeMo, and how do they streamline drug discovery workflows?

The integration of BioNeMo into the Sapio Platform delivers embedded in silico tools directly inside Sapio ELN, including AI-driven molecular simulations, molecular modeling, and protein–ligand docking capabilities. Researchers can generate novel candidate molecules early in the research process and test their docking with a target protein without leaving their primary lab informatics environment. Having these AI-powered in silico tools available in a single, unified workflow enables teams to streamline processes, enhance innovation, and reduce the time required to move from discovery to development.

Which NVIDIA BioNeMo NIM microservices and generative AI models are available in Sapio ELN, and what roles do they play in pharmaceutical research?

Within Sapio ELN, scientists can access BioNeMo NIM microservices to rapidly identify and optimize drug candidates using AI-driven molecular modeling. Available models include AlphaFold2 NIM for predicting accurate 3D protein structures, MoIMIM NIM for the design and optimization of small molecules, and DiffDock NIM, an AI-powered docking model developed by MIT. According to Anthony Costa, Director, Digital Biology at NVIDIA, integrating these BioNeMo NIMs into Sapio’s AI-driven research platform allows researchers to predict, optimize, and validate drug candidates with greater speed and accuracy, underscoring AI’s growing role in transforming pharmaceutical research and accelerating the path to breakthrough treatments.

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Artificial Intelligence / Machine LearningArtificial intelligence (AI) and machine learning (ML) are transformative technologies used to analyze complex data, identify patterns, and make data-driven predictions across diverse scientific fields. Automate the analysis of large or complex data sets using AI algorithms and leverage machine learning models to improve diagnostics, accelerate drug discovery, and refine experimental design. Discover the best AI/ML software, platforms, and analytical tools in our peer-reviewed product directory: compare features, read customer reviews, and request pricing directly from manufacturers.Electronic Laboratory NotebooksElectronic Laboratory Notebooks (ELNs) are becoming increasingly popular for documenting experimental processes and for lab data management. An ELN is informatics software which can be biology specific, chemistry specific, cross-disciplinary or web-based. Advantages of an electronic lab notebook include increased data protection, efficiency and straightforward data searching and sharing.LIMSLIMS (Laboratory Information Management System) is an informatics software system used to improve the quality assurance and quality control (QA / QC) of data management. LIMS can be a standard for common lab workflows, such as commercial off the shelf systems (COTS), or customized for more specialized lab use. Systems are available for mainframe computers or PC.Protein CrystallographyProtein crystallization is the process of crystallizing purified proteins for 3D structure analysis by x-ray crystallography. The main methods of protein crystallization include sitting drop, hanging drop and microbatch. It is important to control parameters such as pH, temperature and concentration. Following crystallization, detectors and software are used for data collection and analysis.BiopharmaceuticalsBiopharmaceuticals are proteins and other compounds (such as nucleic acids) produced by living organisms that have uses as therapeutics or for in vivo diagnostics. The most well known example of a biopharmaceutical product, and the first to be approved for therapeutic use, was recombinant human insulin.Drug DiscoveryDrug discovery is the process of identifying potential new medications, involving stages such as target identification, compound screening, and preclinical development. It relies on cutting-edge technologies like high-throughput screening, artificial intelligence, and molecular modeling to accelerate the identification of drug candidates. Drug discovery plays a pivotal role in developing new therapies for diseases ranging from cancer to rare genetic disorders. Browse our peer-reviewed product directory to find the latest drug discovery technologies, compare options, check customer feedback, and get pricing directly from manufacturers.