Quality control of NGS libraries with daisy chains

17 Jun 2025

The Agilent automated electrophoresis solutions offer fast and reliable quality control of next-generation sequencing (NGS) libraries. The Bioanalyzer, TapeStation, and Fragment Analyzer systems with dedicated high sensitivity assays allow unambiguous detection of daisy chains and accurate sizing of the target library. In this application note, Agilent Technologies provides a recommendation for which assay to employ to reliably visualize daisy chain products in NGS libraries. Furthermore, it emphasizes the consistency between the instruments and reproducibility of analysis confirmed by results on a set of two-fold serial dilutions.

4200 TapeStation Instrument

Agilent Technologies

The Agilent 4200 TapeStation system is an established automated electrophoresis tool for DNA and RNA sample quality control. Fully automated sample processing enables the unattended analysis of size, concentration and integrity. Choose any sample number between 1 and 96 and analyze at constant cost per sample.

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