Omixon Releases the SOLiD Variant Detection Plug-In for CLC bio’s Genomics Platform

8 Feb 2011
Sarah Sarah
Marketing / Sales

Product news

CLC bio and Omixon announce the release of the Omixon Gapped SOLiD Alignment plug-in for full integration into CLC Genomics Workbench. The release agreement allows CLC bio to offer Omixon’s plug-in directly to customers.

"Omixon's software called every genomic variant correctly in a dataset that we subsequently validated with Sanger sequencing", said Dr. Istvan Nagy, Head of NGS Platform at BAYGEN Institute, and continues, "We have used Omixon's algorithms as a service in the past, but including the features in a plug-in for CLC Genomics Workbench brings these utilities to my desktop in an integrated workflow."

CEO of Omixon, Atiila Berces, adds, "In every consulting project we found biologically significant variants in significant numbers missed by other NGS analysis methods and eliminated false positive calls. With this collaboration, the benefits of the Omixon software can reach significantly more scientists. We plan to release a solution for CLC Genomics Server shortly and will continue to develop features for our plug-in that our new customers request."

CLC bio and Omixon have implemented different approaches to analyzing high-throughput sequencing data. While CLC bio’s software is a general platform for handling any sequence data regardless of which sequencing platform it originates from. Omixon’s approach is to develop data analysis solutions specifically designed for particular sequencing technologies and among other things take a DNA evolution models into account. The two approaches have complementary benefits.

CEO of CLC bio, Thomas Knudsen elaborates, “With all the exciting research going on within the high-throughput sequencing field right now, we know we realistically won’t be able to accommodate every single feature request from our customers, which is why we’re very excited to announce this collaboration with Omixon, so we can offer their best-in-class solution directly to our customers.”

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Genome AnalysisGenomics, the study of genomes, includes functional genomics, evolutionary genomics and comparative genomics. There are many genomic technologies such as DNA sequencing of whole genomes, computational biology and bioinformatics. DNA and nucleic acids must be isolated and concentrated from cells for analysis with kits, automated analyzers and software. Other useful technologies for studying genomics include PCR, microarrays and electrophoresis.High-Throughput ScreeningHigh-throughput screening (HTS) is an automated drug discovery technique for identification of active compounds against a compound library. Use HTS readers and integrated assay preparation / analysis workstations to screen your compounds. Identify active compounds against various HTS libraries, including membranes, proteins and peptides and HTS cell lines. Find the best high-throughput screening products in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.DNA SequencingDNA sequencing, such as sanger sequencing, is a biological technique that determines the precise order of nucleotide bases in a fragment or template of DNA. DNA sequencers and genetic analyzers are based on capillary electrophoresis, where labeled DNA fragments are electrophoretically separated by size as they migrate through a polymer. Find the best DNA sequencing products, including DNA sequencing kits, genomic libraries and genetic identity kits in our peer-reviewed product directory: compare products, check customer reviews and receive pricing direct from manufacturers.