Mass Spectrometry > Mass Spectrometry Software Products & Reviews

The Mass Spectrometry Primer, an 82-page paperback book, covers a wide range of topics related to the most wide spread of modern mass spectrometry practices and answers some frequently asked questions about the use and capabilities of mass spectrometers. Links are also provided to articles for more in-depth reading. The first section examines who uses mass spectrometers, followed by how compounds are ionized in the source to b…

Plasma Chromatographic Software   Agilent Technologies' Plasma Chromatographic Software (Plasma Chrom) enables seamless integration of the Agilent 7700 and 7500 Series ICP-MS with chromatography instrumentation. Developed by Agilent, this optional software features powerful integration, calibration and quantification capabilities for handling chromatographic data. Much more than just a data analysis package, the Agilent Plasma…

Agilent Mass Profiler Professional (MPP) software is a powerful chemometrics platform designed to exploit the high information content of MS data and can be used in any MS-based differential analysis to determine relationships among two or more sample groups and variables. 

The Agilent MassHunter METLIN Metabolomics Database and Library enable streamlined metabolite identification to facilitate understanding of global metabolic changes that can occur in a biological system. Available as a comprehensive database of metabolites (PCD) that optionally includes MS/MS spectra (PCDL).

Agilent Deconvolution Reporting Software (DRS) for GC/MS is an application for target compound analyses that combines results from the Agilent MSD Productivity ChemStation, the NIST Automated Mass Spectral Deconvolution and Identification Software (AMDIS), and the NIST 2008 Mass Spectral Search Program (NIST08) into one easy-to-read report. 

Perform truly comprehensive mycotoxin screening applications with the Mycotoxins and Related Metabolites Personal Compound Database and Library (PCDL) for TOF and Q-TOF LC/MS systems. Detailed acquisition method setup information allows fast ramp-up to full productivity.

The Pesticide Personal Compound Database and Library (PCDL) for TOF or Q-TOF LC/MS systems contains a curated accurate-mass database with over 1,700 compounds and accurate-mass MS/MS spectra for more than 800 compounds. Detailed acquisition method setup information allows fast ramp-up to full productivity.

The Pesticide tMRM Database for LC/QQQ system contains a curated database with over 750 compounds, with up to 10 MRM transitions, fragmentor voltages, and collision energies for each compound. Instantly build methods for targeted screening and confident quantitation for hundreds of analytes in a single run. Features: Benefit from seamless integration of the tMRM database into Agilent MassHunter Quantitative software f…

The Veterinary Drug Personal Compound Database and Library (PCDL) for TOF or Q-TOF LC/MS systems contains a curated accurate-mass database with over 2,100 compounds, accurate-mass MS/MS spectra for more than 1,500 compounds, and retention time information for 120 compounds. Detailed acquisition method setup information provided allows for fast ramp-up to full productivity.

The Veterinary Drug tMRM Database for LC/QQQ system contains a curated database with over 650 compounds, with up to 10 MRM transitions, fragmentor voltages, and collision energies for each compound. Instantly build methods for targeted screening and confident quantitation for hundreds of analytes in a single run.

The Forensic Toxicology Personal Compound Database and Library (PCDL) for TOF or Q-TOF LC/MS systems contains a curated accurate-mass database with over 9,200 compounds and accurate-mass MS/MS spectra for more than 3,900 compounds. Detailed acquisition method setup information provided allows for fast ramp-up to full productivity.

The Agilent Metabolomics dMRM Database and Method offers a comprehensive solution for targeted analysis of central carbon metabolites.

Profinder is a fast, batch-processing feature extraction software for differential analysis that supports data from Agilent GC/MSD, GC/Q-TOF, LC/TOF and LC/Q-TOF instruments. Profinder speeds up differential and flux analysis workflows using an intuitive user interface.

VistaFlux software features integrated programs for creating target lists, extracting batch isotopologues, and visualizing stable isotope label flux results on pathways. Turn weeks of manual data processing into just a few hours of work.

Confirm the sequence of proteins and post-translational modifications (PTMs), and characterize variants, before you start expensive testing.

Agilent's Walkup Software enables simplified access to the power and precision of high quality LC and LC/MS processes for multiple users.

The Forensic Toxicology tMRM Database for LC/QQQ system contains a curated database with over 2800 compounds, with up to 10 MRM transitions, fragmentor voltages, and collision energies for all compounds. Instantly build methods for targeted screening and confident quantitation for hundreds of analytes in a single run.

Designed with you in mind.

Efficient and user-friendly data analysis for advanced mass spectrometry-based imaging and profiling experiment.

All-in-one software for accurate metabolic analysis through advanced mass spectrometry technology and software.

Mass Spectrometry Software for Spectral Interpretation and Component Characterization

MassWorks is a post-acquisition software platform redefines what’s possible with mass spectrometry by enhancing both mass and spectral accuracy—on the instruments you already own. Powered by patented calibration algorithms, it delivers results that rival high-end systems, without the cost or complexity of hardware upgrades.

SEQUEST Cluster is a complete, preconfigured proteomics solution that enables accelerated throughput of increasingly complex, multidimensional informatics.Product detail:The SEQUEST Cluster offers a scalable solution for computing the large volumes of data typical in most proteomics analyses using LC/MS. Protein database search times are dramatically reduced by harnessing the power of several processing units in one, increasin…

DeNovoX software automates and accelerates sequencing, returning results equal to or better than those formerly achieved through expert manual sequencing of peptides within proteins and is ideally suited for high-throughput analyses of peptide mixtures. Product detail: DeNovoX is a fully-automated de novo sequencing software program that is capable of determining complete or partial amino acid sequences of unknown peptide…

LCquan 2.0 enabling 21 CRF Part 11 compliance. LCQUAN 2.0 is a closed, secure, multi-level user environment for mass spectral quantitative analysis. When LC Quan 2.0 is used in conjunction with Thermo's electronic Record Manager (eRM), this powerful combination provides the user with a completely secure data archival solution. Product detail: LCQUAN 2.0: Quantitation for the regulated laboratories Companies in regulated i…