Agilent Technologies Shares Vision for Precision Genomics at ASHG 2015

7 Oct 2015
Lois Manton-O'Byrne, PhD
Executive Editor

Agilent Technologies Inc. is sharing its vision for precision medicine this week at the annual meeting of the American Society of Human Genomics. The conference, held in Baltimore, Maryland, is a forum for discussing recent advances in all areas of human genetics.

“As new technologies and greater understanding of the causes and pathways of diseases are moving through the research-clinical continuum, they are driving a revolution in precision medicine—a revolution that is enabling physicians to identify and treat maladies earlier, more effectively and at a lower cost,” said Herman Verrelst, Agilent vice president and general manager, Genomics Solutions Division and Clinical Applications Division.

“Precision medicine requires precision genomics,” he said. “Agilent is focusing its efforts on developing solutions for human and reproductive genetics and cancer genetics. Our latest products, which we are showcasing at ASHG, demonstrate how Agilent is enabling clinical researchers to detect disease-associated genetic changes faster, more cost-effectively and with confidence.”

A speaker at the conference, Verrelst noted that Agilent has initiatives in place to develop products for single-cell and liquid-biopsy analyses and is currently collaborating with key laboratories. These initiatives, he said, will be important in screening for and tracking genetic changes in reproductive and cancer samples.

In addition, he said, Agilent’s recent acquisition of Cartagenia enhances its bioinformatics portfolio and provides customers with access to clinical-grade data-interpretation support software to visualize, assess and report clinical genetics data in the context of patient information.

Building on a strong legacy and expertise within bioreagents, automation and informatics, Agilent this week is showcasing a number of innovative products to support clinical research:

  • GenetiSure Pre-Screen kit for analysis of single cells in embryos.
  • OneSeq target enrichment for genome-wide detection of copy number variations, loss of heterozygosity and mutations—all in a single assay.
  • HaloPlexHS target enrichment for detecting rare variants (<1% allele frequency) using molecular barcodes.
  • SureSelect Human All Exon V6 for targeting exons in even hard-to-capture regions.
  • The AriaMx Real-Time PCR system for amplifying, detecting and analyzing polymerase chain reactions.

Agilent also is showcasing its Cartagenia Bench Lab NGS product that provides interpretation support to identify and report on clinically relevant variants in next-generation sequencing.

HaloPlex Target Enrichment System

Agilent Technologies

Now delivering unparalleled productivity. Enrich any gene panel with our simple, fast and high-performing protocol! Only HaloPlex enables generation of paired-end reads, even when sequencing single-end, with the Paired-End by Design System. Overcome the limitations of Multiplex PCR >20,000 amplicons per tube, with inclusion of multiple amplicon coverage of each base No primer cross-reactivity or dropouts Improved artifact filtration Create your Design in 5 minutes using the SureDesign -The Next Generation Design Tool (https://earray.chem.agilent.com/suredesign/) Obtain an average of over 95% target coverage Learn More: agilent.com/genomics/ngs

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HaloPlex Cancer Research Panel

Agilent Technologies

The HaloPlex Cancer Research Panel enables fast, simple, and efficient analysis of genomic regions of interest for cancer research for a large number of sample types, including FFPE. HaloPlex Cancer is uniquely suited to high performance with cancer research samples, which are commonly preserved as formalin fixed and paraffin embedded (FFPE). This FFPE process often results in highly fragmented DNA, resulting in insufficient sequencing target coverage.Unlike competitive technologies, HaloPlex covers each base with several amplicons, and smaller fragments function as a backup for longer fragments that may fail. This allows for high sequencing target coverage even in highly degraded FFPE samples. FFPE also commonly produces small changes in single bases, cytosine to thymine, in DNA sequences.HaloPlex Cancer Research Panel Features: 47 genes targeting COSMIC mutations Multiplex 96 samples on 1 MiSeq run Compatible with Ion Torrent & Illumina Desktop Sequencers Analyze samples with SureCall Easily customizable in SureDesign

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