Progenesis QI for Proteomics

Manufacturer Nonlinear Dynamics  |  Available Worldwide
4.6
/
5.0
  |  25 reviews


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Average Rating: 4.6
25 Scientists have reviewed this product

5 out of 5
Ease of use
5 out of 5
After sales service
4 out of 5
Value for money


Progenesis QI for proteomics is an efficient and robust platform for proteomic data analysis.
Rating: 5.0

  • Application Area: Biomedical research

"Progenesis QI for proteomics is an efficient and robust platform for proteomic data analysis. The workflow incorporates chromatography, ion-mobility, and data-independent high resolution mass spec acquisition. The platform is readily accessible and accommodates various data formats."

Review date: 09 Sep 2016 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: Mayo Clinic in Arizona



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Progenesis QI is a no-brainer for label-free quantitative proteomics.
Rating: 5.0

  • Application Area:Quantitative Proteomics

"Progenesis QI has made our label-free quantitative proteomics extremely streamlined. In addition, Progenesis QI has been invaluable for troubleshooting and quality control. Progenesis QI is Proteomics 2.0."

Review date: 02 Sep 2016 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2016

  • Organization: University of Leicester



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Very flexible bit of software form biomarker discovery
Rating: 5.0

  • Application Area:Biomarker discovery

"Progenesis QI is a smart intuitive way to analyze large data sets for proteomic and metabolomic studies. We have been able to translate many studies from discovery to verification or mechanistic studies using Progenesis QI."

Review date: 02 Sep 2016 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2015

  • Organization: Tun Abdul Razak Research Centrel



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    4 out of 5
Rating: 4.7

  • Application Area:Protein expression changes in rubber root samples

"Because of our pleasant experience with Progenesis Samespot, we opted for Progenesis QI, we are not disappointed. We are routinely analysing root protein samples for biomarker identification regarding white root disease. The software smoothly handles quite a number of LCMS/MS files (high configuration PC needed) and delivers high quality result. However the current version exports the protein data to excel format, but an additional FASTA format would be much more useful for further analysis. I took one star off for that. It is not a big drawback because FASTA can be generated using external software. As a whole we are satisfied, and are highly dependent on Progenesis QI to carry out shotgun proteomics research. I strongly recommend this software to relevant scientists. "

Review date: 26 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2015

  • Organization: Ghent University



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    4 out of 5
Rating: 4.7

  • Application Area:Peptide- and protein-based applications

"For conventional differential proteomics analysis Progenesis QI for Proteomics needs no further ado: it simply works great. We are however currently optimizing its use in label-free analysis of the so-called "histone code", in which thousands of hard-to-identify and complexly modified peptides are simultaneously analyzed. To us, this is where the software opens unprecedented opportunities because it allows us to isolate strongly significant differential peptide ions first and to focus on the manual identification of only the relevant MSMS spectra, instead of all the 160.000 spectra generated over the total dataset that is aligned. The benefit of such Quantify-then-Identify strategies and subsequent targeted acquisition on differential "features" has been nuanced for protein approaches, but it cannot be overestimated when focusing on (modified) peptides."

Review date: 14 Aug 2015 | Progenesis QI for Proteomics


  • Status:

    Reviewer

  • Member since: 2015

  • Organization: UNC-Chapel Hill



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Rating: 5.0

  • Application Area:Quantification of proteins by label-free LC-MS/MS

"Progenesis QIP is a great tool for a label-free LC-MS/MS proteomics platform. Very aesthetically pleasing and computationally sound."

Review date: 10 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: Mayo Clinic in Arizona



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Rating: 5.0

  • Application Area:Quantitative Proteomics

"Progenesis QI for Proteomics has helped our users finally perform quantitative proteomics easily. This program is extremely easy to use, and the results have been very reproducible and conclusive."

Review date: 10 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2015

  • Organization: Utrecht University



  • Ease of use
    4 out of 5
    After sales service
    5 out of 5
    Value for money
    4 out of 5
Rating: 4.3

  • Application Area:Analysis of Label free quantitative Proteomics datasets

"With QI the analysis of our large dataset was an almost out of the box no hassle and intuitive experience. Compared to the many (open source) product available working with QI was a breeze. We love the user interface and graphical reports. "

Review date: 06 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2015

  • Organization: DTU BIosustain



  • Ease of use
    4 out of 5
    After sales service
    3 out of 5
    Value for money
    4 out of 5
Rating: 3.7

  • Application Area:Shot gun proteomics of cell lysate

"Using the software has increased the number of identifications obtained."

Review date: 06 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2015

  • Organization: Univ Milano Bicocca



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Rating: 5.0

  • Application Area:Proteins and endogenous peptides quantitation in tissue and biological fluids.

"We learny how to use Progenesis in few days and then we could go more in-depth of its features with the support of the company. We got positive comments from all groups that are collaborating with us. "

Review date: 05 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2015

  • Organization: Universidade Estadual do Norte Fluminense



  • Ease of use
    4 out of 5
    After sales service
    3 out of 5
    Value for money
    5 out of 5
Rating: 4.0

  • Application Area:Proteomic Analysis

"The software is quite easy to use; it has an intuitive user-interface, and gives us a very reliable high quality analysis. Although easy, it needs some improvements in data refinements so it will be possible to increase data quality. The rate for "After Sales Care" is because, for now, we did not request any customer service. The value paid for the product worth the investment. I would recommend it to others."

Review date: 05 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2006

  • Organization: UCLA



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    4 out of 5
Rating: 4.7

  • Application Area:biomarkers of radiation exposure in plasma and bone marrow

"Progenesis QI is proving highly effective for making sense out of complex proteomics datasets from animal tissues. The software is straight forward to use and new personnel can be trained easily. Support is excellent with a clear company focus on building a functional relationship. Value for money is good."

Review date: 05 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2015

  • Organization: FEderal University of Minas Gerais



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Rating: 5.0

  • Application Area:Proteomic analysis

"The outputs generated by the software are impressive, including the graphic view of the quality controls along the different steps of the proteomic analysis. Congratulations!"

Review date: 05 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2007

  • Organization: NIH



  • Ease of use
    4 out of 5
    After sales service
    4 out of 5
    Value for money
    3 out of 5
Rating: 3.7

  • Application Area:protein expression in tissus samples

"It enables quality comparison of protein expression in samples at different stages"

Review date: 05 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2015

  • Organization: UCLA



  • Ease of use
    5 out of 5
    After sales service
    4 out of 5
    Value for money
    5 out of 5
Rating: 4.7

  • Application Area:Analysis of peptide quantity across heart diseases development

"We used Progenesis for label-free quantification of proteins across a panel of 20+ heart tissue samples. Progenesis took us all the way through the protein quantification pipeline from loading in LCMS data to understanding the statistics of the results. I would highly recommend it to anyone who wishes to focus on the biological questions and not worrying about finding the right software tools."

Review date: 05 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2015

  • Organization: NUI Maynooth



  • Ease of use
    4 out of 5
    After sales service
    4 out of 5
    Value for money
    3 out of 5
Rating: 3.7

  • Application Area:Biomarker Identification

"Very easy to use with excellent help functions and tutorials. After care sales is good and any technical help is straightforward to arrange. The price of the software will be a consideration as other products become available."

Review date: 05 Aug 2015 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: Cell Signaling Technology



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Rating: 5.0

  • Application Area:PTM and Total Protein Profiling

"The processing software modules are easy to use and guide you through a step-by-step process for efficient and consistent data processing. The software is versatile with regard to the peak detection, and allows one the flexibility to work within a range of sensible sensitivity settings and provides the tools to survey through the results in a timely fashion. The data browser provides an efficient means to view the results in a thorough and efficient manner, for small and large projects. Overall, I am very pleased with Progenesis QI for my quantitative Proteomics needs. "

Review date: 25 Sep 2014 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: UTMB-Galveston



  • Ease of use
    5 out of 5
    After sales service
    3 out of 5
    Value for money
    4 out of 5
Rating: 4.0

  • Application Area:proteomics

"Progenesis QI for proteomics has allowed investigators in our department to perform high-quality label-free quantitative proteomics experiments and find interesting targets for follow-up studies."

Review date: 23 Sep 2014 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: Cancer Research UK



  • Ease of use
    4 out of 5
    After sales service
    5 out of 5
    Value for money
    3 out of 5
Rating: 4.0

  • Application Area:Label-free mass spectrometric quantitation

"This software is now vastly improved compared to earlier versions of the software. The spectral alignments are now more automatic, and easy to verify. Quantitation is accurate and is compatible with data generated from most mass spectrometry vendors. It has a good statistical analysis package. The staff are friendly and very approachable."

Review date: 22 Sep 2014 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: Aarhus University (Denmark)



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Rating: 5.0

  • Application Area:Differential proteomics made easy

"Progenesis LC-MS easily complements Waters PLGS and Expression(E) software giving differential expressed proteins in a statistical platform with integrated tools for advanced statistical filtering of proteomics features. Normalization can be customized against spiked features (most abundant spiked peptides) and untargeted differential proteomics can turn into multi-targeted absolute quantification (1). Overall the easy workflow and dynamic change of experiment design combined with the possibility to combine different runs in groups gives the software a higher level of analysis possibility than just the differential proteomics itself. The use of high resolution instruments with ion mobility (IM) features facilitates the software so that the use of HDMSe and Waters Synapt GS2-I has been implemented into Progenesis QI for proteomics in order to take into account also these extra IM features. 1. Christensen JB, Dionisio G, Poulsen HD, Brinch-Pedersen H.(2014) Effect of pH and Recombina"

Review date: 18 Sep 2014 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: Aalborg University



  • Ease of use
    4 out of 5
    After sales service
    5 out of 5
    Value for money
    4 out of 5
Rating: 4.3

  • Application Area:Proteomics

"Progenesis QI for Proteomics is a quite valuable workflow for LFQ proteomics projects and compatible with most MS instrument platforms. Good value for most Proteomics labs."

Review date: 16 Sep 2014 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: CRUK Manchester Institute, University of Manchester



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    4 out of 5
Rating: 4.7

  • Application Area:Proteomics

"Having used Progenesis LCMS for many years I can confidently confirm it's the most powerful commercial tool for label free proteomics. It's easy to use, has class leading peak detection and produces exceptionally informative stats usually the reserve of advanced informatic packages. An exceptionally valuable tool for high performance label free proteomics."

Review date: 16 Sep 2014 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: UNC Chapel Hill



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Rating: 5.0

  • Application Area:Phosphoproteomics

"Progenesis QI for Proteomics is very user-friendly and allows for quick analysis time."

Review date: 16 Sep 2014 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: Boston University



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Rating: 5.0

  • Application Area:Proteomics and Biomarker Discovery

"Gold standard for label-free LCMS data analysis across all instrument platforms."

Review date: 16 Sep 2014 | Progenesis QI for Proteomics
  • Status:

    Reviewer

  • Member since: 2014

  • Organization: Mayo Clinic in Arizona



  • Ease of use
    5 out of 5
    After sales service
    5 out of 5
    Value for money
    5 out of 5
Rating: 5.0

  • Application Area:Quantitative Proteomics

"We went from spending countless hours analyzing thousands of lines on spreadsheets, to completely automated quantitative proteomics performed in only a few hours. We also significantly improved our MS approach, as a result of the excellent QC insight offered by Progenesis."

Review date: 16 Sep 2014 | Progenesis QI for Proteomics

Progenesis® QI for Proteomics enables you to quantify and identify proteins in your complex samples using the advantages of label-free analysis. With support for all common vendor data formats and a guided workflow, Progenesis QI for Proteomics helps to overcome your data analysis challenges, enabling you to rapidly, objectively and reliably discover proteins of interest from single or fractionated samples.

 

Solving your analysis challenges

  • QC metrics to evaluate the quality of your LC-MS data.
  • Consistent peak peaking across all runs, vital for accurate and precise quantification, using our unique approach to co-detection of peptide ions.
  • Compatible with 1D and 2D-LC and no restrictions on the number of groups, samples or experimental designs you can compare within your analysis.
  • Complete data matrix and no missing values for reliable multivariate statistics.
  • Query Data bases using common search engines to automatically combine identifications with peptide ion quantification data.
  • Fully compatible with ion mobility to achieve three dimensions of resolution.
  • Powerful data visualizations and guided workflow for DIA and DDA analyses.
  • Easy export to Pathway Analysis tools to aid biological understanding of discoveries.

Product Overview

Product Image

Progenesis QI for Proteomics

Manufacturer Nonlinear Dynamics  |  Available Worldwide

4.6 / 5.0 | 25 reviews